Difference between revisions of "SparCC"

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[[Category:Software]][[Category:Microbial Ecology]]
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{|<!--Main settings - REQUIRED-->
 
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|{{#vardefine:app|SparCC}}
 
|{{#vardefine:app|SparCC}}

Revision as of 19:01, 7 July 2017

Description

SparCC website  

SparCC is mainly used for calculating correlations in compositional data. It can also be used to calculate sample diversity, rank abundance plots, etc.

Required Modules

modules documentation

Serial

  • python
  • {{#lowercase:SparCC}}

System Variables

  • HPC_{{#uppercase:SparCC}}_DIR - installation directory
  • HPC_{{#uppercase:SparCC}}_BIN - executable directory
  • HPC_{{#uppercase:SparCC}}_LIB - library directory