Difference between revisions of "FastSpar"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|fastspar}} |{{#vardefine:url|https://github.com/scwatts/...") |
|||
| Line 36: | Line 36: | ||
==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 13:33, 7 July 2017
Description
FastSpar is a c++ implementation of the SparCC algorithm published here: Friedman, J. & Alm, E. J. Inferring correlation networks from genomic survey data. PLoS Comput. Biol. 8, e1002687 (2012). FastSpar is up to several thousand times faster than the original Python2 implementation and uses much less memory.
Required Modules
Serial
- fastspar
System Variables
- HPC_{{#uppercase:fastspar}}_DIR - installation directory
- HPC_{{#uppercase:fastspar}}_BIN - executable directory