Difference between revisions of "DSK"
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(Created page with "Category:SoftwareCategory:BiologyCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|dsk}} |{{#vardefine:url|http://minia.genouest.org/dsk/}} <!--CONFI...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_DOC - documentation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_EXE - example directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 14:55, 9 June 2017
Description
DSK is a k-mer counting software, similar to Jellyfish. DSK can be executed on any machine (only 1 GB memory required for a mammalian dataset) with reasonably low temporary disk usage, and supports any value of k. DSK can count k-mers of large Illumina datasets on laptops and desktop computers.
Required Modules
Serial
- dsk
System Variables
- HPC_{{#uppercase:dsk}}_DIR - installation directory
- HPC_{{#uppercase:dsk}}_DOC - documentation directory
- HPC_{{#uppercase:dsk}}_EXE - example directory
Citation
If you publish research that uses dsk you have to cite it as follows: