Difference between revisions of "LobSTR"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|lobstr}} |{{#vardefine:url|http://lobstr.teamerlich.org/...") |
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* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory | * HPC_{{#uppercase:{{#var:app}}}}_BIN - executable directory | ||
| + | * LOBSTR_INDEXES - indexes directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 14:44, 7 March 2017
Description
lobSTR is a tool for profiling Short Tandem Repeats (STRs) from high throughput sequencing data.
Required Modules
Serial
- gcc/5.2.0
- lobstr
System Variables
- HPC_{{#uppercase:lobstr}}_DIR - installation directory
- HPC_{{#uppercase:lobstr}}_BIN - executable directory
- LOBSTR_INDEXES - indexes directory