Difference between revisions of "SignalP"
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| − | + | ;Note: On HiPerGator signalp code has been changed to create a temporary directory 'tmp' inside the current working directory to prevent signalp from filling up memory disks on HiPerGator2 diskless nodes. You will have to clean up the 'tmp' directory from the job directory after the job or as the last action in the job script to recover the space used by the analysis. | |
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Revision as of 16:32, 11 August 2016
Description
SignalP 4.1 predicts the presence and location of signal peptide cleavage sites in amino acid sequences from different organisms: Gram-positive prokaryotes, Gram-negative prokaryotes, and eukaryotes. The method incorporates a prediction of cleavage sites and a signal peptide/non-signal peptide prediction based on a combination of several artificial neural networks.
Required Modules
Serial
- signalp
System Variables
- HPC_{{#uppercase:signalp}}_DIR - installation directory
Additional Information
- Note
- On HiPerGator signalp code has been changed to create a temporary directory 'tmp' inside the current working directory to prevent signalp from filling up memory disks on HiPerGator2 diskless nodes. You will have to clean up the 'tmp' directory from the job directory after the job or as the last action in the job script to recover the space used by the analysis.
Citation
If you publish research that uses signalp you have to cite it as follows: