SOAPdenovo: Difference between revisions
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SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. | SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way. | ||
31, 63 and 127 kmer versions are available as SOAPdenovo31mer, | 31, 63 and 127 maximum kmer size versions are available as SOAPdenovo31mer (SOAPdenovo binary), SOAPdenovo-63mer, and SOAPdenovo-127mer binaries. | ||
soapdenovo/2.04 module includes GapCloser. | soapdenovo/2.04 module includes GapCloser. | ||
Revision as of 19:20, 23 July 2015
Description
SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way.
31, 63 and 127 maximum kmer size versions are available as SOAPdenovo31mer (SOAPdenovo binary), SOAPdenovo-63mer, and SOAPdenovo-127mer binaries.
soapdenovo/2.04 module includes GapCloser.
Required Modules
Serial
- soapdenovo
System Variables
- HPC_{{#uppercase:soapdenovo}}_DIR - installation directory
- HPC_SOAPDENOVO_BIN - executable directory