Difference between revisions of "GCTA"
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(Created page with "Category:SoftwareCategory:BiologyCategory:GenomicsCategory:SNP {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|gcta}} |{{#vardefine:url|http://cnsgenomics.c...") |
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | [http://www.ncbi.nlm.nih.gov/pubmed/21167468 Yang J, Lee SH, Goddard ME and Visscher PM. GCTA: a tool for Genome-wide Complex Trait Analysis. Am J Hum Genet. 2011 Jan 88(1): 76-82. | + | [http://www.ncbi.nlm.nih.gov/pubmed/21167468 Yang J, Lee SH, Goddard ME and Visscher PM. GCTA: a tool for Genome-wide Complex Trait Analysis. Am J Hum Genet. 2011 Jan 88(1): 76-82. PubMed ID: 21167468] |
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Revision as of 12:26, 21 July 2015
Description
GCTA (Genome-wide Complex Trait Analysis) was originally designed to estimate the proportion of phenotypic variance explained by genome- or chromosome-wide SNPs for complex traits (the GREML method), and has subsequently extended for many other analyses to better understand the genetic architecture of complex traits.
Required Modules
Serial
- gcta
System Variables
- HPC_{{#uppercase:gcta}}_DIR - installation directory
Citation
If you publish research that uses gcta you have to cite it as follows: