Difference between revisions of "HapCompass"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|hapcompass}} |{{#vardefine:url|http://www.brown.edu/Researc...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | * HPC_{{#uppercase:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_DOC - documentation directory | ||
| + | * HPC_{{#uppercase:{{#var:app}}}}_EXE - examples directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 15:19, 19 December 2014
Description
HapCompass implements a novel HAPCOMPASS algorithm for haplotype assembly of densely sequenced human genome data. The algorithm operates on a graph where SNPs are nodes and edges are defined by the sequencing reads and viewed as supporting evidence of co-occuring SNP alleles in a haplotype.
Required Modules
Serial
- hapcompass
System Variables
- HPC_{{#uppercase:hapcompass}}_DIR - installation directory
- HPC_{{#uppercase:hapcompass}}_DOC - documentation directory
- HPC_{{#uppercase:hapcompass}}_EXE - examples directory