Difference between revisions of "Scalablast"
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Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:Genomics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|scalablast}} |{{#vardefine:url|http://omics.pnl.gov/so...") |
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===Parallel (MPI)=== | ===Parallel (MPI)=== | ||
| + | Version 1: | ||
* intel/2013 | * intel/2013 | ||
| + | * openmpi/1.6.5 | ||
| + | * {{#var:app}} | ||
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| + | Version 2: | ||
| + | * gcc/4.7.2 | ||
* openmpi/1.6.5 | * openmpi/1.6.5 | ||
* {{#var:app}} | * {{#var:app}} | ||
Revision as of 17:42, 19 September 2014
Description
ScalaBLAST is a high-performance multiprocessor implementation of the NCBI BLAST library. ScalaBLAST supports all 5 primary program types (blastn, blastp, tblastn, tblastx, and blastx) and several output formats (pairwise, tabular, or XML). ScalaBLAST will run on most multiprocessor systems that have MPI installed, and can run over a wide variety of interconnects including infiniband, quadrics, and ethernet. ScalaBLAST is designed to run a large number of queries against either large or small databases. ScalaBLAST parallelizes the BLAST calculations by dynamically scheduling them across processors using a fault-resilient scheme.
Required Modules
Parallel (OpenMP)
- intel/2013
- scalablast
Parallel (MPI)
Version 1:
- intel/2013
- openmpi/1.6.5
- scalablast
Version 2:
- gcc/4.7.2
- openmpi/1.6.5
- scalablast
System Variables
- HPC_{{#uppercase:scalablast}}_DIR