Difference between revisions of "DSSP"
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| Line 23: | Line 23: | ||
==Required Modules== | ==Required Modules== | ||
[[Modules|modules documentation]] | [[Modules|modules documentation]] | ||
| − | ===Serial=== | + | === Serial (with Intel compiler) === |
| + | *intel/2013 | ||
| + | *{{#lowercase:{{#var:app}}}} | ||
| + | |||
| + | === Serial (with GCC) === | ||
*gcc/4.7.2 | *gcc/4.7.2 | ||
*{{#lowercase:{{#var:app}}}} | *{{#lowercase:{{#var:app}}}} | ||
Revision as of 17:52, 20 May 2014
Description
The DSSP program was designed by Wolfgang Kabsch and Chris Sander to standardize secondary structure assignment. DSSP is a database of secondary structure assignments (and much more) for all protein entries in the Protein Data Bank (PDB). DSSP is also the program that calculates DSSP entries from PDB entries. DSSP does not predict secondary structure.
Required Modules
Serial (with Intel compiler)
- intel/2013
- {{#lowercase:DSSP}}
Serial (with GCC)
- gcc/4.7.2
- {{#lowercase:DSSP}}
System Variables
- HPC_{{#uppercase:DSSP}}_DIR - installation directory
- HPC_{{#uppercase:DSSP}}_BIN - executable directory