Difference between revisions of "SOAPdenovo"
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31, 63 and 127 kmer versions are available as SOAPdenovo31mer, SOAPdenovo63mer and SOAPdenovo127mer | 31, 63 and 127 kmer versions are available as SOAPdenovo31mer, SOAPdenovo63mer and SOAPdenovo127mer | ||
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| + | soapdenovo/2.04 module includes GapCloser. | ||
<!--Modules--> | <!--Modules--> | ||
==Required Modules== | ==Required Modules== | ||
Revision as of 19:59, 6 May 2014
Description
SOAPdenovo is a novel short-read assembly method that can build a de novo draft assembly for the human-sized genomes. The program is specially designed to assemble Illumina GA short reads. It creates new opportunities for building reference sequences and carrying out accurate analyses of unexplored genomes in a cost effective way.
31, 63 and 127 kmer versions are available as SOAPdenovo31mer, SOAPdenovo63mer and SOAPdenovo127mer
soapdenovo/2.04 module includes GapCloser.
Required Modules
Serial
- soapdenovo
System Variables
- HPC_{{#uppercase:soapdenovo}}_DIR - installation directory
- HPC_SOAPDENOVO_BIN - executable directory