Difference between revisions of "Flexbar"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) (Created page with "Category:SoftwareCategory:BioinformaticsCategory:NGS {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|flexbar}} |{{#vardefine:url|http://sourceforge.net/projects...") |
Moskalenko (talk | contribs) |
||
| Line 21: | Line 21: | ||
<!--Modules--> | <!--Modules--> | ||
==Required Modules== | ==Required Modules== | ||
| − | |||
===Serial=== | ===Serial=== | ||
* {{#var:app}} | * {{#var:app}} | ||
| + | <!-- | ||
===Parallel (OpenMP)=== | ===Parallel (OpenMP)=== | ||
* intel | * intel | ||
Revision as of 02:28, 9 December 2012
Description
Flexbar is a program to preprocess sequencing data. It demultiplexes barcoded runs and removes adapter sequences. Further, basic read trimming and filtering options are provided. Flexbar increases mapping rates and improves genome and transcriptome assemblies. It supports next-generation sequencing data in fasta/q and csfasta/q format from Illumina, Roche 454, and the SOLiD platform.
Required Modules
Serial
- flexbar
System Variables
- HPC_{{#uppercase:flexbar}}_DIR