Difference between revisions of "RADICAL"
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{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
|{{#vardefine:app|radical}} | |{{#vardefine:app|radical}} | ||
Revision as of 20:09, 28 November 2012
Description
RADICAL stands for Random Addition Concatenation Analysis. It concatenates randomly selected gene partitions and builds phylogenetic trees (MP with PAUP*/ML with RAxML) to examine tree-to-tree agreement of the concatenation path. Also calculates ML support per node and partition. See Narechania et al. (2011 Genome Biol Evol).
Required Modules
Serial
- radical
System Variables
- HPC_{{#uppercase:radical}}_DIR