Difference between revisions of "Cutadapt"

From UFRC
Jump to navigation Jump to search
m (Text replace - "<!--Choose sections to enable - OPTIONAL--> |{{#vardefine:mod|1}} <!--Present instructions for running the software with modules -->" to "")
m (Text replace - "|{{#vardefine:intel|}} <!-- E.g. "11.1" --> |{{#vardefine:mpi|}} <!-- E.g. "openmpi/1.3.4" -->" to "")
Line 8: Line 8:
 
|{{#vardefine:url|http://code.google.com/p/cutadapt/}}
 
|{{#vardefine:url|http://code.google.com/p/cutadapt/}}
 
<!--Compiler and MPI settings - OPTIONAL -->
 
<!--Compiler and MPI settings - OPTIONAL -->
|{{#vardefine:intel|}} <!-- E.g. "11.1" -->
+
 
|{{#vardefine:mpi|}} <!-- E.g. "openmpi/1.3.4" -->
 
  
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->
 
|{{#vardefine:exe|}} <!--Present manual instructions for running the software -->

Revision as of 17:53, 10 August 2012



Description

cutadapt website  

cutadapt removes adapter sequences from high-throughput sequencing data. This is usually necessary when the read length of the sequencing machine is longer than the molecule that is sequenced, for example when sequencing microRNAs.

Required Modules

modules documentation

Serial

  • cutadapt
  • HPC_CUTADAPT_BIN - executable directory