Difference between revisions of "CisGenome"
Jump to navigation
Jump to search
Moskalenko (talk | contribs) m (Text replace - "==Available versions== (.*)+ <!-- -->" to "<!--Modules-->") |
Moskalenko (talk | contribs) m (Text replace - "Usage policy" to "Usage Policy") |
||
| Line 45: | Line 45: | ||
{{#if: {{#var: pbs}}|==PBS Script Examples== | {{#if: {{#var: pbs}}|==PBS Script Examples== | ||
See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | ||
| − | {{#if: {{#var: policy}}|==Usage | + | {{#if: {{#var: policy}}|==Usage Policy== |
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used)|}} | ||
{{#if: {{#var: testing}}|==Performance== | {{#if: {{#var: testing}}|==Performance== | ||
Revision as of 16:30, 10 August 2012
Description
An integrated tool for tiling array, ChIP-seq, genome and cis-regulatory element analysis.
Execution Environment and Modules
To use cisgenome with the environment modules system at HPC the following commands are available:
Get module information for cisgenome:
$module spider cisgenome
Load the default application module:
$module load cisgenome
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_CISGENOME_DIR - directory where cisgenome is located.
- HPC_CISGENOME_BIN - executable directory