Bismark: Difference between revisions
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Moskalenko (talk | contribs) m Text replace - "<!--Versions--> ==Available versions== .* <!--Modules-->" to "<!--Modules-->" |
Moskalenko (talk | contribs) m Text replace - "Usage policy" to "Usage Policy" |
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See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | See the [[{{PAGENAME}}_PBS]] page for {{#var: app}} PBS script examples.|}} | ||
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{{#if: {{#var: policy}}|==Usage | {{#if: {{#var: policy}}|==Usage Policy== | ||
WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used) | WRITE USAGE POLICY HERE (perhaps templates for a couple of main licensing schemes can be used) | ||
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Revision as of 16:30, 10 August 2012
Description
Bismark is a bisulfite read mapper and methylation caller.
Execution Environment and Modules
To use bismark with the environment modules system at HPC the following commands are available:
Get module information for bismark:
$module spider bismark
Load the default application module:
$module load bismark
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BISMARK_DIR - directory where bismark is located.