Difference between revisions of "Newbler"
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Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life Sciences, a Roche Diagnostics company. | Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life Sciences, a Roche Diagnostics company. | ||
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{{#if: {{#var: mod}}|==Execution Environment and Modules== | {{#if: {{#var: mod}}|==Execution Environment and Modules== | ||
Revision as of 02:36, 10 August 2012
Description
Newbler is a software package for de novo DNA sequence assembly. It is designed specifically for assembling sequence data generated by the 454 GS-series of pyrosequencing platforms sold by 454 Life Sciences, a Roche Diagnostics company.
Execution Environment and Modules
To use newbler with the environment modules system at HPC the following commands are available:
Get module information for newbler:
$module spider newbler
Load the default application module:
$module load newbler
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_NEWBLER_DIR - directory where newbler is located.
- HPC_NEWBLER_BIN - executable directory