Bismark: Difference between revisions
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Moskalenko (talk | contribs) m Text replace - "==Running the application using modules==" to "==Execution Environment and Modules==" |
Moskalenko (talk | contribs) m Text replace - "<!--Versions--> ==Available versions== .* <!--Modules-->" to "<!--Modules-->" |
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Bismark is a bisulfite read mapper and methylation caller. | Bismark is a bisulfite read mapper and methylation caller. | ||
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{{#if: {{#var: mod}}|==Execution Environment and Modules== | {{#if: {{#var: mod}}|==Execution Environment and Modules== | ||
Revision as of 02:36, 10 August 2012
Description
Bismark is a bisulfite read mapper and methylation caller.
Execution Environment and Modules
To use bismark with the environment modules system at HPC the following commands are available:
Get module information for bismark:
$module spider bismark
Load the default application module:
$module load bismark
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BISMARK_DIR - directory where bismark is located.