Difference between revisions of "Proteinortho"
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Revision as of 02:03, 10 August 2012
Description
Computation of genome-wide orthology data.
The program Proteinortho is a stand-alone tool that is geared towards large datasets and makes use of distributed computing techniques when run on multi-core hardware. It implements an extended version of the reciprocal best alignment heuristic.
Available versions
- 4.26
Execution Environment and Modules
To use proteinortho with the environment modules system at HPC the following commands are available:
Get module information for proteinortho:
$module spider proteinortho
Load the default application module:
$module load proteinortho
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_PROTEINORTHO_DIR - directory where proteinortho is located.