Difference between revisions of "CAP3"
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Moskalenko (talk | contribs) m (Text replace - "<!--Location--> {{App_Location|app={{#var:app}}|{{#var:ver}}}}" to "") |
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In addition, pcap binaries are also provided. | In addition, pcap binaries are also provided. | ||
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* HPC_CAP3_BIN - location of the CAP3 executables directory | * HPC_CAP3_BIN - location of the CAP3 executables directory | ||
Revision as of 02:02, 10 August 2012
Description
CAP3 is a sequence assembly program. See documentation at capdoc site.
Intel processor optimized versions of cap3 and formcon are installed at HPC.
Opteron optimized versions of these binaries are named cap3-opteron and formcon-opteron.
In addition, pcap binaries are also provided.
Execution Environment and Modules
To use cap3 with the environment modules system at HPC the following commands are available:
Get module information for cap3:
$module spider cap3
Load the default application module:
$module load cap3
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_CAP3_DIR - directory where cap3 is located.
- HPC_CAP3_BIN - location of the CAP3 executables directory
- HPC_CAP3_DOC - location of the CAP3 docs directory
- HPC_CAP3_EXAMPLE - location of the CAP3 examples directory