BLASTDB: Difference between revisions
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Moskalenko (talk | contribs) Created page with "Category:BiologyCategory:Bioinformatics Both the command line BLAST and the Galaxy Framework at UF HPC use the same BLAST databases. We provide 3 rec..." |
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===Provided BLASTDB databases=== | ===Provided BLASTDB databases=== | ||
(Alphabetical listing) | |||
'''2012-02''': | '''2012-02''': | ||
* est | |||
* est_human | * est_human | ||
* est_mouse | * est_mouse | ||
Revision as of 19:16, 20 February 2012
Both the command line BLAST and the Galaxy Framework at UF HPC use the same BLAST databases. We provide 3 recent monthly releases of the BLASTDB (blast databases). The current BLASTDB version is made available to the ncbi_blast tools via the BLASTDB environment variable. Currently provided databases are listed below. If you need a different database and would like to avoid using up your personal filespace quota please file a Support Request Ticket or contact the UF HPC Biological Computing Support.
Provided BLASTDB releases
- 2011-12
- 2012-01
- 2012-02
Provided BLASTDB databases
(Alphabetical listing)
2012-02:
- est
- est_human
- est_mouse
- st_others
- nr
- nt
- other_genomic
- refseq_genomic
- refseqgene
- refseq_protein
- refseq_rna
- swissprot
- wgs