Difference between revisions of "Bamtools"
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* HPC_BAMTOOLS_BIN - executable directory | * HPC_BAMTOOLS_BIN - executable directory | ||
* HPC_BAMTOOLS_INC - includes directory | * HPC_BAMTOOLS_INC - includes directory | ||
| + | ==Additional tools== | ||
| + | We also provide small tools that depend on bamtools or are built against it within this module. | ||
| + | * [https://github.com/ekg/bamaddrg bamaddrg] (2012-01-27 build against bamtools 0.9.4) - [ | ||
{{#if: {{#var: exe}}|==How To Run== | {{#if: {{#var: exe}}|==How To Run== | ||
WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | WRITE INSTRUCTIONS ON RUNNING THE ACTUAL BINARY|}} | ||
Revision as of 23:06, 27 January 2012
Description
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BamTools is a project that provides both a C++ API and a command-line toolkit for reading, writing, and manipulating BAM (genome alignment) files.
Template:App Location
Available versions
- 2.1.0
Running the application using modules
To use bamtools with the environment modules system at HPC the following commands are available:
Get module information for bamtools:
$module spider bamtools
Load the default application module:
$module load bamtools
The modulefile for this software adds the directory with executable files to the shell execution PATH and sets the following environment variables:
- HPC_BAMTOOLS_DIR - directory where bamtools is located.
- HPC_BAMTOOLS_BIN - executable directory
- HPC_BAMTOOLS_INC - includes directory
Additional tools
We also provide small tools that depend on bamtools or are built against it within this module.
- bamaddrg (2012-01-27 build against bamtools 0.9.4) - [