Difference between revisions of "Installed Software"
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(Updated some bioinformatics programs) |
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| [[Boost]] || 1.37.0, 1.46.1 || | | [[Boost]] || 1.37.0, 1.46.1 || | ||
| + | |- | ||
| + | | [[tuxedo|Bowtie]] || 0.12.7 || [http://bowtie-bio.sourceforge.net/index.shtml http://bowtie-bio.sourceforge.net/] | ||
|- | |- | ||
| [[Charmm]] || 35b2 || | | [[Charmm]] || 35b2 || | ||
| Line 29: | Line 31: | ||
|- | |- | ||
| [[Crystal]] || 1.0.2 || | | [[Crystal]] || 1.0.2 || | ||
| + | |- | ||
| + | | [[tuxedo|Cufflinks]] || 1.0.3 || [http://cufflinks.cbcb.umd.edu/ http://cufflinks.cbcb.umd.edu/] | ||
|- | |- | ||
| [[dar]] || 2.3.9 || | | [[dar]] || 2.3.9 || | ||
| Line 92: | Line 96: | ||
| [[rsm]] || 2961 || | | [[rsm]] || 2961 || | ||
|- | |- | ||
| − | | [[samtools]] || 0.1.16 || | + | | [[samtools]] || 0.1.16 || [http://samtools.sourceforge.net/ http://samtools.sourceforge.net/] |
|- | |- | ||
| [[SAS]] || 9.1, 9.2 || [http://www.sas.com SAS] | | [[SAS]] || 9.1, 9.2 || [http://www.sas.com SAS] | ||
| Line 102: | Line 106: | ||
| [[tau]] || 2.20.1 || | | [[tau]] || 2.20.1 || | ||
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| − | | [[tuxedo]] || | + | | [[tuxedo|Tophat]] || 1.3.0 || [http://tophat.cbcb.umd.edu/ http://tophat.cbcb.umd.edu/] |
| + | |- | ||
| + | | [[tuxedo]] || The "tuxedo suite," Bowtie, Tophat, and Cufflinks || | ||
|- | |- | ||
| [[VASP]] || 4.6.34,5.2.0 || [http://cms.mpi.univie.ac.at/vasp/ cms.mpi.univie.ac.at] | | [[VASP]] || 4.6.34,5.2.0 || [http://cms.mpi.univie.ac.at/vasp/ cms.mpi.univie.ac.at] | ||
Revision as of 21:23, 19 June 2011
The following is a list of the installed software packages maintained at the UF HPC Center.
List updated 15 June 2011.
Software
- Many versions available.
/scratch/ufhpc/osg/app/etc/grid3-locations.txtmay have an up-to-date list. Or look underneath/scratch/ufhpc/osg/app/cmssoft.