Difference between revisions of "Hivtrace"
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[[Category:Software]][[Category:Biology]][[Category:Alignment]] | [[Category:Software]][[Category:Biology]][[Category:Alignment]] | ||
{|<!--CONFIGURATION: REQUIRED--> | {|<!--CONFIGURATION: REQUIRED--> | ||
| − | |{{#vardefine:app| | + | |{{#vardefine:app|hivtrace}} |
| − | |{{#vardefine:url| | + | |{{#vardefine:url|https://github.com/veg/hivtrace}} |
<!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)--> | ||
|{{#vardefine:conf|}} <!--CONFIGURATION--> | |{{#vardefine:conf|}} <!--CONFIGURATION--> | ||
Revision as of 19:04, 23 May 2024
Description
HIV-TRACE (TRAnsmission Cluster Engine) is an application that identifies potential transmission clusters within a supplied FASTA file.
Environment Modules
Run module spider hivtrace to find out what environment modules are available for this application.
System Variables
- HPC_HIVTRACE_DIR - installation directory
- HPC_HIVTRACE_BIN - executable directory
Additional Information
usage: hivtrace -h
Citation
If you publish research that uses hivtrace you have to cite it as follows: