Difference between revisions of "MEGAN"
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To run the MEGAN6 GUI to process your data, launch an interactive session in Open on Demand (or use your GPU allocation) and type the following command: | To run the MEGAN6 GUI to process your data, launch an interactive session in Open on Demand (or use your GPU allocation) and type the following command: | ||
| + | |||
| + | $ module load megan | ||
$ MEGAN | $ MEGAN | ||
Revision as of 15:36, 15 April 2024
Description
MEGAN6 - MEta Genome ANalyzer - is a comprehensive toolbox for interactively analyzing microbiome data. All the interactive tools you need in one application.
- Taxonomic analysis using the NCBI taxonomy or a customized taxonomy such as SILVA
- Functional analysis using InterPro2GO, SEED, eggNOG or KEGG
- Bar charts, word clouds, and many other charts
- PCoA, clustering and networks
- Supports metadata
- MEGAN parses many different types of input
Environment Modules
Run module spider megan to find out what environment modules are available for this application.
System Variables
- HPC_MEGAN_DIR - installation directory
- HPC_MEGAN_BIN - executable directory
Additional Information
To run the MEGAN6 GUI to process your data, launch an interactive session in Open on Demand (or use your GPU allocation) and type the following command:
$ module load megan
$ MEGAN
Usage Manual for MEGAN6: https://software-ab.cs.uni-tuebingen.de/download/megan6/manual.pdf