Difference between revisions of "Raven"
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Latest revision as of 21:14, 20 November 2023
Description
Raven is a de novo genome assembler for long uncorrected reads.
Environment Modules
Users should create their own environments for this application. See below for additional information.
Installation
Building the application (with CUDA support):
module load conda
mamba create -yp /blue/your/install/path/raven/1.8.3 python zlib gcc cmake doxygen boost thrust=1.9.8
mamba activate /blue/your/install/path/raven/1.8.3
module load cuda
git clone https://github.com/lbcb-sci/raven && cd raven
cmake -S ./ -B./build -DRAVEN_BUILD_EXE=1 -DCMAKE_BUILD_TYPE=Release -Dracon_enable_cuda=Yes --install-prefix=/blue/your/install/path/raven/1.8.3
cmake --build build
cmake --install ./build
Add the installation path to your $PATH for runtime.