Difference between revisions of "Trvz"
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(Created page with "Category:Software {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|trvz}} |{{#vardefine:url|https://github.com/PacificBiosciences/trgt}} <!--CONFIGURATION: OPTIONAL (|1}...") |
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| − | TRGT is a tool for targeted genotyping of tandem repeats from PacBio HiFi data. In addition to the basic size genotyping, TRGT profiles sequence composition, mosaicism, and CpG methylation of each analyzed repeat. | + | TRVZ is a companion tool with TRGT for visualization of reads overlapping the repeats. TRGT is a tool for targeted genotyping of tandem repeats from PacBio HiFi data. In addition to the basic size genotyping, TRGT profiles sequence composition, mosaicism, and CpG methylation of each analyzed repeat. |
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==Environment Modules== | ==Environment Modules== | ||
Latest revision as of 14:46, 28 July 2023
Description
TRVZ is a companion tool with TRGT for visualization of reads overlapping the repeats. TRGT is a tool for targeted genotyping of tandem repeats from PacBio HiFi data. In addition to the basic size genotyping, TRGT profiles sequence composition, mosaicism, and CpG methylation of each analyzed repeat.
Environment Modules
Run module spider trvz to find out what environment modules are available for this application.
System Variables
- HPC_TRVZ_DIR - installation directory