Difference between revisions of "Qupath"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Imaging {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|qupath}} |{{#vardefine:url|https://qupath.github.io/}} <!--CON...") |
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
| − | + | Bankhead, P. et al. QuPath: Open source software for digital pathology image analysis. Scientific Reports (2017). | |
| + | https://doi.org/10.1038/s41598-017-17204-5 | ||
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Latest revision as of 17:50, 11 April 2023
Description
Used for digital pathology applications because it offers a
powerful set of tools for working with whole slide images
- but it can be applied to lots of other kinds of image as well.
Environment Modules
Run module spider qupath to find out what environment modules are available for this application.
System Variables
- HPC_QUPATH_DIR - installation directory
- HPC_QUPATH_BIN - executable directory
Citation
If you publish research that uses qupath you have to cite it as follows:
Bankhead, P. et al. QuPath: Open source software for digital pathology image analysis. Scientific Reports (2017). https://doi.org/10.1038/s41598-017-17204-5