Difference between revisions of "RepeatMasker"
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Latest revision as of 20:32, 12 August 2022
Description
RepeatMasker is a program that screens DNA sequences for interspersed repeats and low complexity DNA sequences. The output of the program is a detailed annotation of the repeats that are present in the query sequence as well as a modified version of the query sequence in which all the annotated repeats have been masked (default: replaced by Ns). On average, almost 50% of a human genomic DNA sequence currently will be masked by the program. Sequence comparisons in RepeatMasker are performed by one of several popular search engines including, cross_match, ABBlast/WUBlast, RMBlast and Decypher.
Environment Modules
Run module spider repeatmasker to find out what environment modules are available for this application.
System Variables
- HPC_REPEATMASKER_DIR - installation directory