SCRIPTURE

Description

scripture website  

Scripture is a method for transcriptome reconstruction that relies solely on RNA-Seq reads and an assembled genome to build a transcriptome ab initio. The statistical methods to estimate read coverage significance are also applicable to other sequencing data. Scripture also has modules for ChIP-Seq peak calling.

Environment Modules

Run module spider scripture to find out what environment modules are available for this application.

System Variables

• HPC_SCRIPTURE_DIR - installation directory

Citation

If you publish research that uses scripture you have to cite it as follows:

Ab initio reconstruction of cell type–specific transcriptomes in mouse reveals the conserved multi-exonic structure of lincRNAs