Difference between revisions of "Ibdne"

Revision as of 17:02, 27 May 2022

Description

The IBDNe program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) segments detected by the IBDseq program.

Required Modules

Serial

ibdne

System Variables

HPC_IBDNE_DIR - installation directory

Additional Information

IBDseq is part of IBDNe.

Citation

If you publish research that uses ibdne you have to cite it as follows:

S R Browning and B L Browning (2015) Accurate non-parametric estimation of recent effective population size from segments of identity by descent. American Journal of Human Genetics. In Press. doi:10.1016/j.ajhg.2015.07.012

@@ Line 5: / Line 5: @@
 <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
 |{{#vardefine:conf|}}           <!--CONFIGURATION-->
-|{{#vardefine:exe|}}            <!--ADDITIONAL INFO-->
+|{{#vardefine:exe|1}}            <!--ADDITIONAL INFO-->
-|{{#vardefine:job|}}            <!--JOB SCRIPTS-->
+|{{#vardefine:pbs|}}            <!--PBS SCRIPTS-->
 |{{#vardefine:policy|}}         <!--POLICY-->
 |{{#vardefine:testing|}}       <!--PROFILING-->
@@ Line 18: / Line 18: @@
 {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
 The IBDNe program estimates the historical effective population size of a homogenous population. The input for the IBDNe program is the set of identity-by-descent (IBD) segments detected by the IBDseq program.
 <!--Modules-->
-==Environment Modules==
+==Required Modules==
-Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application.
+===Serial===
+* {{#var:app}}
+<!--
+===Parallel (OpenMP)===
+* intel
+* {{#var:app}}
+===Parallel (MPI)===
+* intel
+* openmpi
+* {{#var:app}}
+-->
 ==System Variables==
 * HPC_{{uc:{{#var:app}}}}_DIR - installation directory