Difference between revisions of "Jutils"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|Jutils}} |{{#vardefine:url|https://github.com/splicebox/Jutils}} <!--CONFIGU...") |
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| − | {{#if: {{#var: exe}}|== | + | {{#if: {{#var: exe}}1|==Usage Examples== |
| − | + | <pre>$ module load jutils/1.0 | |
| + | $ jutils.py -h | ||
| + | usage: jutils.py [-h] {convert-results,venn-diagram,heatmap,sashimi} ... | ||
| + | |||
| + | positional arguments: | ||
| + | {convert-results,venn-diagram,heatmap,sashimi} | ||
| + | commands | ||
| + | venn-diagram | ||
| + | heatmap | ||
| + | sashimi | ||
| + | |||
| + | optional arguments: | ||
| + | -h, --help show this help message and exit</pre> | ||
|}} | |}} | ||
Revision as of 19:20, 14 March 2022
Description
Jutils is a visualization toolkit for alternative splicing events. It uses an intermediate tab separated file (TSV) to represent alternative splicing data such as that generated by a differential splicing prediction program. Jutils supports the vizualization of results generated by popular differential splicing (DS) prediction tools MntJULiP, LeafCutter, MAJIQ and rMATS. Additionally, users can write their own routines to convert the output of any other DS program into the unified TSV data format, which can then be visualized with Jutils.
Environment Modules
Run module spider Jutils to find out what environment modules are available for this application.
System Variables
- HPC_JUTILS_DIR - installation directory
- HPC_JUTILS_BIN - executable directory
Usage Examples
$ module load jutils/1.0
$ jutils.py -h
usage: jutils.py [-h] {convert-results,venn-diagram,heatmap,sashimi} ...
positional arguments:
{convert-results,venn-diagram,heatmap,sashimi}
commands
venn-diagram
heatmap
sashimi
optional arguments:
-h, --help show this help message and exit