Difference between revisions of "VeryFastTree"
Jump to navigation
Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|veryfasttree}} |{{#vardefine:url|https://github.com/citiususc/veryfasttree}}...") |
|||
| Line 25: | Line 25: | ||
==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 21:03, 12 February 2021
Description
VeryFastTree is a highly-tuned implementation of the FastTree-2 tool that takes advantage of parallelization and vectorization strategies to speed up the inference of phylogenies for huge alignments. It is important to highlight that VeryFastTree keeps unchanged the phases, methods and heuristics used by FastTree-2 to estimate the phylogenetic tree. In this way, it produces trees with the same topological accuracy than FastTree-2. In addition, unlike the parallel version of FastTree-2, VeryFastTree is deterministic.
Environment Modules
Run module spider veryfasttree to find out what environment modules are available for this application.
System Variables
- HPC_VERYFASTTREE_DIR - installation directory
- HPC_VERYFASTTREE_BIN - executable directory
Citation
If you publish research that uses veryfasttree you have to cite it as follows: