Difference between revisions of "JCVI"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|jcvi}} |{{#vardefine:url|https://github.com/tanghaibao/jcvi}} <!--CONFIGURAT...") |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
| + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
| + | |||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Latest revision as of 14:30, 4 September 2020
Description
Collection of Python libraries to parse bioinformatics files, or perform computation related to assembly, annotation, and comparative genomics.
Environment Modules
Run module spider jcvi to find out what environment modules are available for this application.
System Variables
- HPC_JCVI_DIR - installation directory
- HPC_JCVI_BIN - executable directory
Citation
If you publish research that uses jcvi you have to cite it as follows:
Tang et al. (2008) Synteny and Collinearity in Plant Genomes.