Fast-gep: Difference between revisions

Latest revision as of 15:46, 22 July 2022

Fast and easy way to infer high-resolution genealogical relationship of bacterial isolates with WGS assembly data.

Run module spider fast-gep to find out what environment modules are available for this application.

If you publish research that uses fast-gep you have to cite it as follows:

@@ Line 1: / Line 1: @@
 [[Category:Software]][[Category:Phylogenetics]]
 {|<!--CONFIGURATION: REQUIRED-->
-|{{#vardefine:app|fastgep}}
+|{{#vardefine:app|fast-gep}}
 |{{#vardefine:url|https://github.com/jizhang-nz/fast-GeP}}
 <!--CONFIGURATION: OPTIONAL (|1}} means it's ON)-->
@@ Line 18: / Line 18: @@
 {{App_Description|app={{#var:app}}|url={{#var:url}}|name={{#var:app}}}}|}}
-Large-scale WGS dataset based studies are becoming increasingly common. WGS based pathogen surveillance and outbreak investigations create a demand for highly discriminative and time-efficient bioinformatics tools to transform large amounts of sequencing data into usable biological information such as relationship of the isolates.
+Fast and easy way to infer high-resolution genealogical relationship of bacterial isolates with WGS assembly data.
 <!--Modules-->
@@ Line 26: / Line 26: @@
 * HPC_{{uc:{{#var:app}}}}_DIR - installation directory
 * HPC_{{uc:{{#var:app}}}}_BIN - executable directory
+* HPC_{{uc:{{#var:app}}}}_EXE - example directory
 <!--Configuration-->