Difference between revisions of "Braker"

From UFRC
Jump to navigation Jump to search
(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|braker}} |{{#vardefine:url|https://github.com/Gaius-Augustus/BRAKER}} <!--CO...")
 
Line 10: Line 10:
 
|{{#vardefine:testing|}}      <!--PROFILING-->
 
|{{#vardefine:testing|}}      <!--PROFILING-->
 
|{{#vardefine:faq|}}            <!--FAQ-->
 
|{{#vardefine:faq|}}            <!--FAQ-->
|{{#vardefine:citation|}}      <!--CITATION-->
+
|{{#vardefine:citation|1}}      <!--CITATION-->
 
|{{#vardefine:installation|}} <!--INSTALLATION-->
 
|{{#vardefine:installation|}} <!--INSTALLATION-->
 
|}
 
|}

Revision as of 21:52, 26 August 2020

Description

braker website  

BRAKER is a pipeline for fully automated prediction of protein coding gene structures with GeneMark-ES/ET and AUGUSTUS in novel eukaryotic genomes

Environment Modules

Run module spider braker to find out what environment modules are available for this application.

System Variables

  • HPC_BRAKER_DIR - installation directory
  • HPC_BRAKER_BIN - executable directory




Citation

If you publish research that uses braker you have to cite it as follows:

https://github.com/Gaius-Augustus/BRAKER#citing-braker-and-software-called-by-braker