Difference between revisions of "M5nr"
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| − | + | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |
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==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Revision as of 20:07, 10 June 2022
Description
The M5NR is an integration of many sequence databases into one single, searchable database (plus an index). A single similarity search (using BLAST or BLAT) will allow the user to retrieve similarities to several databases (e.g. NCBI’s nr, KEGGs database or the EGGnogs — see below for a complete list).
Environment Modules
Run module spider m5nr to find out what environment modules are available for this application.
System Variables
- HPC_M5NR_DIR - installation directory