Delly: Difference between revisions
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Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
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<!--Modules--> | <!--Modules--> | ||
== | ==Environment Modules== | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | |||
< | |||
==System Variables== | ==System Variables== | ||
* HPC_{{uc:{{#var:app}}}}_DIR - installation directory | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
Latest revision as of 16:46, 10 June 2022
Description
Delly2 is an integrated structural variant prediction method that can discover, genotype and visualize deletions, tandem duplications, inversions and translocations at single-nucleotide resolution in short-read massively parallel sequencing data. It uses paired-ends and split-reads to sensitively and accurately delineate genomic rearrangements throughout the genome. Structural variants can be visualized using Delly-maze and Delly-suave.
Environment Modules
Run module spider delly to find out what environment modules are available for this application.
System Variables
- HPC_DELLY_DIR - installation directory
- HPC_DELLY_BIN - executable directory