Difference between revisions of "NtEdit"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|ntedit}} |{{#vardefine:url|https://github.com/bcgsc/ntEdit}} <!--CONFIGURATI...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:23, 6 December 2019
Description
ntEdit is a scalable genomics application for polishing genome assembly drafts. ntEdit simplifies polishing and "haploidization" of gene and genome sequences with its re-usable Bloom filter design. We expect ntEdit to have additional applications in fast mapping of simple nucleotide variations between any two individuals or species’ genomes.
Environment Modules
Run module spider ntedit to find out what environment modules are available for this application.
System Variables
- HPC_NTEDIT_DIR - installation directory
- HPC_NTEDIT_BIN - executable directory