Difference between revisions of "MTG2"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mtg2}} |{{#vardefine:url|https://sites.google.com/site/honglee0707/mtg2}} <!...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:21, 6 December 2019
Description
MTG is a computer program to provide Genomic Residual Maximum Likelihood (GREML) estimates for genetic and environmental variance and covariance across multiple traits. The program implements a multivariate linear mixed model and can fit complex covariance structures that can be derived from genomic information, i.e. multivariate version of GCTA GREML. The program also provides best liner unbiased prediction (BLUP) of additive genetic effects; either breeding values or predictions of genetic risk.
Environment Modules
Run module spider mtg2 to find out what environment modules are available for this application.
System Variables
- HPC_MTG2_DIR - installation directory
- HPC_MTG2_BIN - executable directory