Dadi: Difference between revisions
Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|dadi}} |{{#vardefine:url|https://bitbucket.org/gutenkunstlab/dadi}} <!--CONF..." |
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If you publish research that uses {{#var:app}} you have to cite it as follows: | If you publish research that uses {{#var:app}} you have to cite it as follows: | ||
RN Gutenkunst, RD Hernandez, SH Williamson, CD Bustamante "Inferring the joint demographic history of multiple populations from multidimensional SNP data" PLoS Genetics 5:e1000695 (2009). | |||
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Revision as of 18:50, 31 January 2019
Description
∂a∂i implements methods for demographic history and selection inference from genetic data, based on diffusion approximations to the allele frequency spectrum. One of ∂a∂i's main benefits is speed: fitting a two-population model typically takes around 10 minutes, and run time is independent of the number of SNPs in your data set. ∂a∂i is also flexible, handling up to three simultaneous populations, with arbitrary timecourses for population size and migration, plus the possibility of admixture and population-specific selection.
Environment Modules
Run module spider dadi to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:dadi}}_DIR - installation directory
- HPC_{{#uppercase:dadi}}_BIN -executable directory
- HPC_{{#uppercase:dadi}}_DOC - documentation directory
- HPC_{{#uppercase:dadi}}_EXE - example directory
Citation
If you publish research that uses dadi you have to cite it as follows:
RN Gutenkunst, RD Hernandez, SH Williamson, CD Bustamante "Inferring the joint demographic history of multiple populations from multidimensional SNP data" PLoS Genetics 5:e1000695 (2009).