Difference between revisions of "RIGERJ"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|rigerj}} |{{#vardefine:url|https://github.com/broadinstitute/rigerj}} <!--CO...") |
Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_LIB - library directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:24, 6 December 2019
Description
Java implementation of RIGER and other gene enrichment methods, useful for RNAi and CRISPR screen analysis.
Environment Modules
Run module spider rigerj to find out what environment modules are available for this application.
System Variables
- HPC_RIGERJ_DIR - installation directory
- HPC_RIGERJ_BIN - executable directory
- HPC_RIGERJ_LIB - library directory