Difference between revisions of "Genomic-fluidity"
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(Created page with "Category:SoftwareCategory:Phylogenetics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|genomic-fluidity}} |{{#vardefine:url|https://github.com/WeitzGroup/Genomic-f...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:21, 6 December 2019
Description
A collection of Perl scripts to calculate gene-level similarity among annotated genomes as used in Kislyuk et al. BMC Genomics 12: 32 (2011). The scripts can be executed from the command line and the only dependencies are BioPerl and NCBI BLAST.
Environment Modules
Run module spider genomic-fluidity to find out what environment modules are available for this application.
System Variables
- HPC_GENOMIC-FLUIDITY_DIR - installation directory
- HPC_GENOMIC-FLUIDITY_BIN - executable directory
- HPC_GENOMIC-FLUIDITY_DOC - documentation directory