Difference between revisions of "Necklace"
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Revision as of 16:46, 31 May 2018
Description
In species where the reference genome or annotation is incomplete, RNA-Seq analyses can benefit from performing a genome-guided and de novo assembly, in addition to using the reference annotation. Necklace is a software pipeline to run genome-guided and de novo assembly and combine the resulting transcriptomes with reference genome annotations. Necklace constructs a compact but comprehensive superTranscriptome
Environment Modules
Run module spider necklace to find out what environment modules are available for this application.
System Variables
- HPC_{{#uppercase:necklace}}_DIR - installation directory
- HPC_{{#uppercase:necklace}}_BIN - executable directory
- HPC_{{#uppercase:necklace}}_CONF - installation directory
Additional Information
Make sure to use HPC_{{#uppercase:necklace}}_CONF to point the software to the necklace.groovy file.