TraitRate: Difference between revisions
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==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
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{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:29, 6 December 2019
Description
traitRate is a program for the detection of trait-dependent shifts in the rate of sequence evolution.
Sample input files are available at http://www.tau.ac.il/~itaymay/cp/traitRate/index.html and in the "$HPC_TRAITRATE_EXE" directory.
Required Modules
Serial
- traitrate
System Variables
- HPC_TRAITRATE_DIR - installation directory
Citation
If you publish research that uses traitrate you have to cite it as follows:
Mayrose I and Otto SP. 2011. A Likelihood Method for Detecting Trait-Dependent Shifts in the Rate of Molecular Evolution. Mol Biol Evol. 28:781-791.
Validation
- Validated 4/5/2018