Difference between revisions of "DRAP"
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Moskalenko (talk | contribs) m (Text replacement - "#uppercase" to "uc") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
Latest revision as of 21:20, 6 December 2019
Description
Short read RNASeq de novo assembly is a well established method to study transcription of organisms lacking a reference genome sequence. Available packages such as Trinity and Oases have proven to be able to high quality contigs from short reads.
Environment Modules
Run module spider drap to find out what environment modules are available for this application.
System Variables
- HPC_DRAP_DIR - installation directory
- HPC_DRAP_BIN - executable directory