MIRA: Difference between revisions
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Created page with "Category:SoftwareCategory:BiologyCategory:BioinformaticsCategory:GenomicsCategory:Assembly {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|mira}} |{{#va..." |
Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DOC - documentation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
Revision as of 21:21, 6 December 2019
Description
MIRA - Sequence assembler and sequence mapping for whole genome shotgun and EST / RNASeq sequencing data. Can use Sanger, 454, Illumina and IonTorrent data. PacBio: CCS and error corrected data usable, uncorrected not yet.
Environment Modules
Run module spider mira to find out what environment modules are available for this application.
System Variables
- HPC_MIRA_DIR - installation directory
- HPC_MIRA_BIN - executable directory
- HPC_MIRA_DOC - documentation directory