Infernal: Difference between revisions
Jump to navigation
Jump to search
Moskalenko (talk | contribs) Created page with "Category:SoftwareCategory:Biology {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|infernal}} |{{#vardefine:url|http://infernal.janelia.org/}} <!--CONFIGURATION: OPT..." |
Moskalenko (talk | contribs) m Text replacement - "#uppercase" to "uc" |
||
| Line 30: | Line 30: | ||
Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
* HPC_{{ | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory | ||
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:21, 6 December 2019
Description
Infernal ("INFERence of RNA ALignment") is for searching DNA sequence databases for RNA structure and sequence similarities. It is an implementation of a special case of profile stochastic context-free grammars called covariance models (CMs). A CM is like a sequence profile, but it scores a combination of sequence consensus and RNA secondary structure consensus, so in many cases, it is more capable of identifying RNA homologs that conserve their secondary structure more than their primary sequence.
Environment Modules
Run module spider infernal to find out what environment modules are available for this application.
System Variables
- HPC_INFERNAL_DIR - installation directory