Difference between revisions of "IgBLAST"
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(Created page with "Category:SoftwareCategory:BiologyCategory:Bioinformatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|igblast}} |{{#vardefine:url|https://ncbi.github.io/igbl...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DOC - installation directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:21, 6 December 2019
Description
IgBLAST was developed at the NCBI to facilitate the analysis of immunoglobulin and T cell receptor variable domain sequences.
IgBLAST allows users to view the matches to the germline V, D and J genes, details at rearrangement junctions, the delineation of IG V domain framework regions and complementarity determining regions. IgBLAST has the capability to analyse nucleotide and protein sequences and can process sequences in batches. Furthermore, IgBLAST allows searches against the germline gene databases and other sequence databases simultaneously to minimize the chance of missing possibly the best matching germline V gene.a
Environment Modules
Run module spider igblast to find out what environment modules are available for this application.
System Variables
- HPC_IGBLAST_DIR - installation directory
- HPC_IGBLAST_BIN - installation directory
- HPC_IGBLAST_DOC - installation directory