Difference between revisions of "Tcoffee"
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(Created page with "Category:SoftwareCategory:Bioinformatics {|<!--CONFIGURATION: REQUIRED--> |{{#vardefine:app|tcoffee}} |{{#vardefine:url|http://www.tcoffee.org/Projects/tcoffee/}} <!--...") |
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Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | Run <code>module spider {{#var:app}}</code> to find out what environment modules are available for this application. | ||
==System Variables== | ==System Variables== | ||
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_DIR - installation directory |
| − | * HPC_{{ | + | * HPC_{{uc:{{#var:app}}}}_BIN - executable directory |
<!--Configuration--> | <!--Configuration--> | ||
{{#if: {{#var: conf}}|==Configuration== | {{#if: {{#var: conf}}|==Configuration== | ||
Revision as of 21:29, 6 December 2019
Description
T-Coffee is a multiple sequence alignment package. You can use T-Coffee to align sequences or to combine the output of your favorite alignment methods (Clustal, Mafft, Probcons, Muscle...) into one unique alignment (M-Coffee).
Environment Modules
Run module spider tcoffee to find out what environment modules are available for this application.
System Variables
- HPC_TCOFFEE_DIR - installation directory
- HPC_TCOFFEE_BIN - executable directory
Citation
If you publish research that uses tcoffee you have to cite it as follows:
T-Coffee: A novel method for multiple sequence alignments. Notredame,Higgins,Heringa,JMB,302(205-217), 2000